SNP Profiles matching EET400 [ECU]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
1._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
2._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
3._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
4._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
5._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
6._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
7._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
8._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
9._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
10._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
11._RUQ_1531	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
12._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
13._PA_186_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
14._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	_	AA	GG	CC	AG
15._RUQ_1531	_	AG	GG	CT	_	_	_	TT	_	_	_	_	CC	AG
16._PA_289_[PER]	CC	GG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AA
17._PA_88_[PER]	_	AG	GG	CT	_	CC	CT	TT	CC	_	AA	AG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	TT	CC	GG	GG	AA	TT	CC	GG	TT	CC	AC
1._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
2._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
3._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
4._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
5._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
6._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
7._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
8._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
9._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
10._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
11._RUQ_1531	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
12._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
13._PA_186_[PER]	CC	AA	CG	TT	CC	GG	-	AA	TT	CC	CG	TT	CC	AC
14._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
15._RUQ_1531	_	_	_	_	CC	GG	GG	_	TT	CC	CG	TT	CC	AC
16._PA_289_[PER]	TT	AA	CG	TT	CC	GG	-	AA	TT	CC	GG	GT	CC	AA
17._PA_88_[PER]	CT	AA	CG	TT	CC	GG	GG	AA	TT	CC	GG	GG	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AA	CC	AC	CT	GG	AC	AT	GG	X_X	X_X
1._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	_	GG	AC	AT	GG	X_X	X_X
2._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	_	GG	AC	AT	GG	X_X	X_X
3._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
4._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
5._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
6._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
7._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
8._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
9._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
10._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
11._RUQ_1531	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
12._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
13._PA_186_[PER]	AA	GG	AA	CC	AA	CC	AA	CC	GG	AC	AT	GG	X_X	X_X
14._PA_156_[PER]	AA	GG	AA	CC	AA	_	AA	CC	GG	AC	AT	GG	X_X	X_X
15._RUQ_1531	AA	_	AA	CC	AA	CC	AA	CC	GG	AC	_	_	X_X	X_X
16._PA_289_[PER]	AA	GG	AA	CC	AA	CC	AC	CT	GG	CC	AT	GG	X_X	X_X
17._PA_88_[PER]	AA	GG	AA	CC	AA	_	AC	_	GG	AC	AT	GG	X_X	X_X

Input profile: EET_400_[ECU]

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

1._PA_156_[PER]

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_156_[PER] GC-05-137-3-39

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

3._PA_156_[PER]

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 5 > FP

Dapeng Zhang, 2016

4._PA_156_[PER]

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 4 > FP

Dapeng Zhang, 2016

5._PA_156_[PER]

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 3 > FP

Dapeng Zhang, 2016

6._PA_156_[PER]

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 2

Dapeng Zhang, 2016

7._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

9._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

11._PA_156_[PER] RUQ_1531

93.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._PA_156_[PER]

93.8 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row1 C0184 28

Dapeng Zhang, 2016

13._PA_186_[PER]

93.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 446

Dapeng Zhang, 2014

14._PA_156_[PER]

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D295 T1

Dapeng Zhang, 2016

15._PA_156_[PER] RUQ_1531

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._PA_289_[PER]

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 803

Dapeng Zhang, 2014

17._PA_88_[PER]

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D677

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25